Publication:
Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery

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dc.contributor.author Fetzer, Andreas
dc.contributor.author Metzger, Jasmin
dc.contributor.author Katic, Darko
dc.contributor.author März, Keno
dc.contributor.author Wagner, Martin
dc.contributor.author Philipp, Patrick
dc.contributor.author Engelhardt, Sandy
dc.contributor.author Weller, Tobias
dc.contributor.author Zelzer, Sascha
dc.contributor.author Franz, Alfred M.
dc.contributor.author Schoch, Nicolai
dc.contributor.author Heuveline, Vincent
dc.contributor.author Maleshkova, Maria
dc.contributor.author Rettinger, Achim
dc.contributor.author Speidel, Stefanie
dc.contributor.author Wolf, Ivo
dc.contributor.author Kenngott, Hannes
dc.contributor.author Mehrabi, Arianeb
dc.contributor.author Müller-Stich, Beat P.
dc.contributor.author Maier-Hein, Lena
dc.contributor.author Meinzer, Hans-Peter
dc.contributor.author Nolden, Marco
dc.date.issued 2016-03-25
dc.description.abstract In the surgical domain, individual clinical experience, which is derived in large part from past clinical cases, plays an important role in the treatment decision process. Simultaneously the surgeon has to keep track of a large amount of clinical data, emerging from a number of heterogeneous systems during all phases of surgical treatment. This is complemented with the constantly growing knowledge derived from clinical studies and literature. To recall this vast amount of information at the right moment poses a growing challenge that should be supported by adequate technology. While many tools and projects aim at sharing or integrating data from various sources or even provide knowledge-based decision support - to our knowledge - no concept has been proposed that addresses the entire surgical pathway by accessing the entire information in order to provide context-aware cognitive assistance. Therefore a semantic representation and central storage of data and knowledge is a fundamental requirement. We present a semantic data infrastructure for integrating heterogeneous surgical data sources based on a common knowledge representation. A combination of the Extensible Neuroimaging Archive Toolkit (XNAT) with semantic web technologies, standardized interfaces and a common application platform enables applications to access and semantically annotate data, perform semantic reasoning and eventually create individual context-aware surgical assistance. The infrastructure meets the requirements of a cognitive surgical assistant system and has been successfully applied in various use cases. The system is based completely on free technologies and is available to the community as an open-source package. © 2016 SPIE.
dc.description.version VoR
dc.identifier.citation Andreas Fetzer, Jasmin Metzger, Darko Katic, Keno März, Martin Wagner, Patrick Philipp, Sandy Engelhardt, Tobias Weller, Sascha Zelzer, Alfred Michael Franz, Nicolai Schoch, Vincent Heuveline, Maria Maleshkova, Achim Rettinger, Stefanie Speidel, Ivo Wolf, Hannes Kenngott, Arianeb Mehrabi, Beat P. Müller-Stich, Lena Maier-Hein, Hans-Peter Meinzer, Marco Nolden, "Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery," Proc. SPIE 9789, Medical Imaging 2016: PACS and Imaging Informatics: Next Generation and Innovations, 97890O (25 March 2016); https://doi.org/10.1117/12.2217163
dc.identifier.doi 10.1117/12.2217163
dc.identifier.isbn 978-1-5106-0024-9
dc.identifier.issn 1996-756X
dc.identifier.uri https://openhsu.ub.hsu-hh.de/handle/10.24405/16550
dc.language.iso en
dc.publisher SPIE
dc.relation.conference SPIE Medical Imaging : 27 February - 3 March 2016, San Diego, California, United States
dc.relation.journal Proceedings of SPIE
dc.relation.orgunit Karlsruhe Institute of Technology
dc.rights.accessRights metadata only access
dc.subject Data integration
dc.subject Knowledge modeling
dc.subject Ontologies
dc.subject Open-source
dc.subject Semantic data
dc.subject infrastructure
dc.subject Surgery
dc.subject Surgical assistance
dc.title Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery
dc.type Konferenzbeitrag
dcterms.bibliographicCitation.booktitle Medical Imaging 2016: PACS and Imaging Informatics: Next Generation and Innovations
dspace.entity.type Publication
hsu.uniBibliography Nein
oaire.citation.volume 9789
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